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1.
Biochem Biophys Res Commun ; 591: 76-81, 2022 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-34999257

RESUMO

Proteases are enzymes that are not only essential for life but also industrially important. Understanding the substrate recognition mechanisms of proteases is important to enhance the use of proteases. The fungus Aspergillus produces a wide variety of proteases, including PEP, which is a prolyl endoprotease from A. niger. Although PEP exhibits amino acid sequence similarity to the serine peptidase family S28 proteins (PRCP and DPP7) that recognize Pro-X bonds in the terminal regions of peptides, PEP recognizes Pro-X bonds not only in peptides but also in proteins. To reveal the structural basis of the prolyl endoprotease activity of PEP, we determined the structure of PEP by X-ray crystallography at a resolution of 1.75 Å. The PEP structure shows that PEP has a wide-open catalytic pocket compared to its homologs. The characteristic catalytic pocket structure of PEP is predicted to be important for the recognition of protein substrates.


Assuntos
Aspergillus niger/enzimologia , Cristalografia por Raios X , Prolil Oligopeptidases/química , Prolil Oligopeptidases/metabolismo , Sequência de Aminoácidos , Domínio Catalítico , Modelos Moleculares , Homologia Estrutural de Proteína , Especificidade por Substrato
2.
Bioorg Chem ; 119: 105533, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34902647

RESUMO

A novel ANAP (Aspergillus niger from alkaline protease) catalyzed one pot three component approach in the synthesis of new thiazolidinedione festooned quinoline analogues via Knoevenagel condensation and N-alkylation have been reported. The catalytic effect of enzyme was monitored and optimized by adjusting various parameters including catalyst concentration, choice of solvent and temperature. The isolated alkaline protease exhibits favorable features for the reaction response such as the shorter reaction time, simple work-up procedure, clean reaction profiles and excellent product yields through reusability of the catalyst upto five cycles. In silico molecular docking simulations were carried out to find out the effective binding affinity of the synthesized quinoline analogues 4(a-i) towards PPARγ protein (Id-2XKW). In vitro α-amylase and α-glucosidase assays were performed for hypoglycemic activity evaluation. In vivo hypoglycemic studies carried out on streptozotocin (SZT) induced diabetic male albino rats have shown that compounds 4e and 4f significantly reduced blood glucose levels with percentage reduction of 43.7 ± 0.91 and 45.6 ± 0.28 at a concentration of 50 mg/kg body wt. The results obtained from molecular docking simulations and in vitro enzyme assays are in consistent with in-vivo studies which clearly demonstrated that out of the synthesized quinoline analogues, compounds 4e and 4f possess promising hypoglycemic activity which was on par to that of standards pioglitazone and rosiglitazone respectively.


Assuntos
Proteínas de Bactérias/metabolismo , Diabetes Mellitus Experimental/tratamento farmacológico , Endopeptidases/metabolismo , Inibidores Enzimáticos/farmacologia , Hipoglicemiantes/farmacologia , Quinolinas/farmacologia , Tiazolidinedionas/farmacologia , Animais , Aspergillus niger/enzimologia , Biocatálise , Diabetes Mellitus Experimental/induzido quimicamente , Relação Dose-Resposta a Droga , Inibidores Enzimáticos/química , Inibidores Enzimáticos/metabolismo , Hipoglicemiantes/química , Hipoglicemiantes/metabolismo , Masculino , Modelos Moleculares , Estrutura Molecular , Quinolinas/química , Quinolinas/metabolismo , Ratos , Estreptozocina , Relação Estrutura-Atividade , Tiazolidinedionas/química , Tiazolidinedionas/metabolismo , alfa-Amilases/antagonistas & inibidores , alfa-Amilases/metabolismo , alfa-Glucosidases/metabolismo
3.
Carbohydr Polym ; 277: 118813, 2022 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-34893230

RESUMO

Citrus pectins were studied by enzymatic fingerprinting using a simultaneous enzyme treatment with endo-polygalacturonase (endo-PG) from Kluyveromyces fragilis and pectin lyase (PL) from Aspergillus niger to reveal the methyl-ester distribution patterns over the pectin backbone. Using HILIC-MS combined with HPAEC enabled the separation and identification of the diagnostic oligomers released. Structural information on the pectins was provided by using novel descriptive parameters such as degree of blockiness of methyl-esterified oligomers by PG (DBPGme) and degree of blockiness of methyl-esterified oligomers by PL (DBPLme). This approach enabled us to clearly differentiate citrus pectins with various methyl-esterification patterns. The simultaneous use of PG and PL showed additional information, which is not revealed in digests using PG or PL alone. This approach can be valuable to differentiate pectins having the same DM and to get specific structural information on pectins and therefore to be able to better predict their physical and biochemical functionalities.


Assuntos
Pectinas/metabolismo , Poligalacturonase/metabolismo , Polissacarídeo-Liases/metabolismo , Aspergillus niger/enzimologia , Kluyveromyces/enzimologia , Pectinas/análise
4.
Mol Biotechnol ; 64(2): 187-198, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34580814

RESUMO

Xylanases (EC 3.2.1.8) have been considered as a potential green solution for the sustainable development of a wide range of industries including pulp and paper, food and beverages, animal feed, pharmaceuticals, and biofuels because they are the key enzymes that degrade the xylosidic linkages of xylan, the major component of the second most abundant raw material worldwide. Therefore, there is a critical need for the industrialized xylanases which must have high specific activity, be tolerant to organic solvent or detergent and be active during a wide range of conditions, such as high temperature and pH. In this study, an extracellular xylanase was purified from the culture broth of Aspergillus niger VTCC 017 for primary structure determination and properties characterization. The successive steps of purification comprised centrifugation, Sephadex G-100 filtration, and DEAE-Sephadex chromatography. The purified xylanase (specific activity reached 6596.79 UI/mg protein) was a monomer with a molecular weight of 37 kDa estimating from SDS electrophoresis. The results of LC/MS suggested that the purified protein is indeed an endo-1,4-ß-D-xylanase. The purified xylanase showed the optimal temperature of 55 °C, and pH 6.5 with a stable xylanolytic activity within the temperature range of 45-50 °C, and within the pH range of 5.0-8.0. Most divalent metal cations including Zn2+, Fe2+, Mg2+, Cu2+, Mn2+ showed some inhibition of xylanase activity while the monovalent metal cations such as K+ and Ag+ exhibited slight stimulating effects on the enzyme activity. The introduction of 10-30% different organic solvents (n-butanol, acetone, isopropanol) and several detergents (Triton X-100, Tween 20, and SDS) slightly reduced the enzyme activity. Moreover, the purified xylanase seemed to be tolerant to methanol and ethanol and was even stimulated by Tween 80. Overall, with these distinctive properties, the putative xylanase could be a successful candidate for numerous industrial uses.


Assuntos
Aspergillus niger/enzimologia , Proteínas Fúngicas/isolamento & purificação , Xilosidases/isolamento & purificação , Xilosidases/metabolismo , Detergentes/química , Dextranos , Eletroforese em Gel de Poliacrilamida , Estabilidade Enzimática , Filtração/métodos , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Concentração de Íons de Hidrogênio , Cinética , Metais/química , Solventes/química , Temperatura , Xilosidases/química
5.
Microb Genom ; 7(12)2021 12.
Artigo em Inglês | MEDLINE | ID: mdl-34874247

RESUMO

Pectinolytic enzymes are a variety of enzymes involved in breaking down pectin, a complex and abundant plant cell-wall polysaccharide. In nature, pectinolytic enzymes play an essential role in allowing bacteria and fungi to depolymerize and utilize pectin. In addition, pectinases have been widely applied in various industries, such as the food, wine, textile, paper and pulp industries. Due to their important biological function and increasing industrial potential, discovery of novel pectinolytic enzymes has received global interest. However, traditional enzyme characterization relies heavily on biochemical experiments, which are time consuming, laborious and expensive. To accelerate identification of novel pectinolytic enzymes, an automatic approach is needed. We developed a machine learning (ML) approach for predicting pectinases in the industrial workhorse fungus, Aspergillus niger. The prediction integrated a diverse range of features, including evolutionary profile, gene expression, transcriptional regulation and biochemical characteristics. Results on both the training and the independent testing dataset showed that our method achieved over 90 % accuracy, and recalled over 60 % of pectinolytic genes. Application of the ML model on the A. niger genome led to the identification of 83 pectinases, covering both previously described pectinases and novel pectinases that do not belong to any known pectinolytic enzyme family. Our study demonstrated the tremendous potential of ML in discovery of new industrial enzymes through integrating heterogeneous (post-) genomimcs data.


Assuntos
Aspergillus niger/enzimologia , Biologia Computacional/métodos , Pectinas/química , Poligalacturonase/genética , Aspergillus niger/genética , Bases de Dados Genéticas , Evolução Molecular , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Perfilação da Expressão Gênica , Regulação Enzimológica da Expressão Gênica , Regulação Fúngica da Expressão Gênica , Aprendizado de Máquina , Poligalacturonase/metabolismo
6.
Biotechnol Lett ; 43(12): 2299-2310, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34718907

RESUMO

OBJECTIVE: To develop an endo-ß-1,4-xylanase with high specificity for production of prebiotic xylooligosaccharides that optimally works at moderate temperature desirable to reduce the energy cost in the production process. RESULTS: The xylB gene, encoding for a glycosyl hydrolase family 11 xylanase from a thermoresistant fungus, Aspergillus niger BCC14405 was expressed in a methylotrophic yeast P. pastoris KM71 in a secreted form. The recombinant XylB showed a high specific activity of 3852 and 169 U mg-1 protein on beechwood xylan and arabinoxylan, respectively with no detectable side activities against different forms of cellulose (Avicel Ò PH101 microcrystalline cellulose, phosphoric acid swollen cellulose and carboxymethylcellulose). The enzyme worked optimally at 45 °C, pH 6.0. It showed a specific cleavage pattern by releasing xylobiose (X2) as the major product from xylooligosaccharides (X3 to X6) substrates. The highest XOS yield of 708 mg g-1 substrate comprising X2, X3 and X6 was obtained from beechwood xylan hydrolysis. CONCLUSION: The enzyme is potent for XOS production and for saccharification of lignocellulosic biomass.


Assuntos
Aspergillus niger/química , Endo-1,4-beta-Xilanases/genética , Glucuronatos/biossíntese , Oligossacarídeos/biossíntese , Xilanos/metabolismo , Aspergillus niger/enzimologia , Endo-1,4-beta-Xilanases/isolamento & purificação , Estabilidade Enzimática/genética , Glucuronatos/química , Concentração de Íons de Hidrogênio , Hidrólise , Oligossacarídeos/química , Especificidade por Substrato , Temperatura , Xilanos/genética
7.
Sci Rep ; 11(1): 21000, 2021 10 25.
Artigo em Inglês | MEDLINE | ID: mdl-34697353

RESUMO

ß-Glucanase has received great attention in recent years regarding their potential biotechnological applications and antifungal activities. Herein, the specific objectives of the present study were to purify, characterize and immobilize ß-glucanase from Aspergillus niger using covalent binding and cross linking techniques. The evaluation of ß-glucanase in hydrolysis of different lignocellulosic wastes with subsequent bioethanol production and its capability in biocontrol of pathogenic fungi was investigated. Upon nutritional bioprocessing, ß-glucanase production from A. niger EG-RE (MW390925.1) preferred ammonium nitrate and CMC as the best nitrogen and carbon sources, respectively. The soluble enzyme was purified by (NH4)2SO4, DEAE-Cellulose and Sephadex G200 with 10.33-fold and specific activity of 379.1 U/mg protein. Tyrosyl, sulfhydryl, tryptophanyl and arginyl were essential residues for enzyme catalysis. The purified ß-glucanase was immobilized on carrageenan and chitosan with appreciable yield. However, the cross-linked enzyme exhibited superior activity along with remarkable improved thermostability and operational stability. Remarkably, the application of the above biocatalyst proved to be a promising candidate in liberating the associate lignocellulosic reducing sugars, which was utilized for ethanol production by Saccharomyces cerevisiae. The purified ß-glucanase revealed an inhibitory effect on the growth of two tested phytopathogens Fusarium oxysporum and Penicillium digitatum.


Assuntos
Antifúngicos , Aspergillus niger/enzimologia , Agentes de Controle Biológico , Enzimas Imobilizadas , Etanol/metabolismo , Fermentação , Glicosídeo Hidrolases/biossíntese , Glicosídeo Hidrolases/química , Aspergillus niger/classificação , Aspergillus niger/genética , Biotecnologia , Glicosídeo Hidrolases/genética , Glicosídeo Hidrolases/isolamento & purificação , Testes de Sensibilidade Microbiana , Filogenia
8.
Food Funct ; 12(21): 10806-10812, 2021 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-34617090

RESUMO

As a popular vegetable, Toona sinensis has a wide range of bioactivities including lipase inhibitory activity. In the present study, an efficient and rapid method using a ligand-enzyme complex was established for screening of an active compound against lipase from Toona sinensis. The ethyl acetate extract of Toona sinensis showed good lipase inhibitory activity. After incubation with lipase, one of the compounds in the extract decreased significantly while comparing the HPLC chromatograms before and after incubation, which indicated that it may be the active compound bound to lipase. Then, the compound was isolated using a Sephadex LH-20 column and identified as 1,2,3,4,6-penta-O-galloyl-ß-D-glucose. The in vitro activity test showed that the compound had good inhibitory activity against lipase, and its IC50 value was 118.8 ± 1.53 µg mL-1. The kinetic experiments indicated that 1,2,3,4,6-penta-O-galloyl-ß-D-glucose inhibited lipase through mixed competitive and non-competitive inhibitions. Further docking results showed that the target compound could bind to the active site of lipase stably through seven hydrogen bonds, resulting in a docking energy of -8.31 kcal mol-1. The proposed method can not only screen the lipase inhibitors from Toona sinensis quickly and effectively, but also provide an effective way for the rapid screening of active substances in natural food and plants.


Assuntos
Aspergillus niger/enzimologia , Inibidores Enzimáticos/farmacologia , Lipase/antagonistas & inibidores , Extratos Vegetais/farmacologia , Folhas de Planta/química , Toona/química , Inibidores Enzimáticos/química , Simulação de Acoplamento Molecular , Extratos Vegetais/química
9.
Sci Rep ; 11(1): 19670, 2021 10 04.
Artigo em Inglês | MEDLINE | ID: mdl-34608188

RESUMO

Aspergillus niger MH078571.1 and A. niger MH079049.1 were identified previously as the two highest Aspergillus niger strains producing lipase. Biochemical characterizations of lipase activity and stability for these two strains were examined and revealed that the optimal temperature is 45 °C at pH 8for A. niger MH078571.1 and 55 °C for MH079049.1. The lipase production of both strains was studied on medium contains waste oil, as a cheap source to reduce the industrial cost, showed that the optimal incubation period for the enzyme production is 3 days. Moreover, an experiment on lipase activates in organic solvents demonstrated that 50% of acetone is the best solvent for the two strains. In the presence of surfactants, 0.1% of tween 80 surfactant showed the best lipase activities. Furthermore, Mg2+ and Zn2+ ions enhanced the lipase activity of A. niger MH078571.1, while Na2+ and Cu2+ enhanced the enzyme activity of A. niger MH079049.1. Lipase activity was also tested for industrial applications such as integrating it with different detergents. Maximum lipase activity was obtained with 1% of Omo as a powder detergent for both strains. In liquid detergent, 0.1% of Fairy showed maximum lipase activity in A. niger MH078571.1, while the lipase in A. niger MH079049.1 was more effective in 1% of Lux. Moreover, the degradation of natural animal fat with crude enzyme was tested using chicken and sheep fats. The results showed that more than 90% of fats degraded after 5 days of the incubation period.


Assuntos
Aspergillus niger/enzimologia , Biodegradação Ambiental , Misturas Complexas/química , Gorduras/química , Lipase/química , Óleos/química , Gerenciamento de Resíduos/métodos , Animais , Aspergillus niger/metabolismo , Ativação Enzimática , Fermentação , Lipase/biossíntese
10.
J Biol Chem ; 297(4): 101129, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34478709

RESUMO

Chitin deacetylases (CDAs) are found in many different organisms ranging from marine bacteria to fungi and insects. These enzymes catalyze the removal of acetyl groups from chitinous substrates generating various chitosans, linear copolymers consisting of N-acetylglucosamine (GlcNAc) and glucosamine. CDAs influence the degree of acetylation of chitosans as well as their pattern of acetylation, a parameter that was recently shown to influence the physicochemical properties and biological activities of chitosans. The binding site of CDAs typically consists of around four subsites, each accommodating a single sugar unit of the substrate. It has been hypothesized that the subsite preferences for GlcNAc or glucosamine units play a crucial role in the acetylation pattern they generate, but so far, this characteristic was largely ignored and still lacks structural data on the involved residues. Here, we determined the crystal structure of an Aspergillus niger CDA. Then, we used molecular dynamics simulations, backed up with a variety of in vitro activity assays using different well-defined polymeric and oligomeric substrates, to study this CDA in detail. We found that Aspergillus niger CDA strongly prefers a GlcNAc sugar unit at its -1 subsite and shows a weak GlcNAc preference at the other noncatalytic subsites, which was apparent both when deacetylating and N-acetylating oligomeric substrates. Overall, our results show that the combination of in vitro and in silico methods used here enables the detailed analysis of CDAs, including their subsite preferences, which could influence their substrate targets and the characteristics of chitosans produced by these species.


Assuntos
Amidoidrolases/química , Aspergillus niger/enzimologia , Simulação por Computador , Proteínas Fúngicas/química , Acetilglucosamina/química , Amidoidrolases/metabolismo , Cristalografia por Raios X , Domínios Proteicos , Especificidade por Substrato
11.
Sci Rep ; 11(1): 18745, 2021 09 21.
Artigo em Inglês | MEDLINE | ID: mdl-34548523

RESUMO

A new serine carboxypeptidase gene, capA, was identified in Aspergillus niger CBS 513.88 by reading genomic information and performing sequence alignment, and the gene was cloned and expressed in Pichia pastoris GS115. In a shake flask, the enzyme activity of the recombinant strain GS115 (pPIC9K-capA) reached 209.3 U mg-1. The optimal temperature and pH for enzyme activity were determined to be 45 °C and 6.0, respectively. After incubation at 40-50 °C or at pH 4.0-8.0 for 1 h, the enzyme retained more than 80% or 60% of its initial activity. The presence of 1-10 mmol L-1 Mg2+ enhanced the activity of CapA, whereas 1-10 mmol L-1 Cu2+, Fe2+, or Co2+, 10 mmol L-1 Mn2+, or 1-10 mmol L-1 phenylmethylsulfonyl fluoride (PMSF) significantly inhibited its activity. CapA had a broad substrate specificity and preferred the hydrophobic amino acids Leu and Lys at the C terminus of proteins, and N-benzyloxycarbonyl-L-phenylalanyl-L-leucine (Cbz-Phe-Leu) was the optimal substrate, for which CapA exhibited Km 0.063 mmol L-1 and kcat/Km 186.35 mmol L-1 s-1. The good thermostability, pH stability and hydrolysis characteristics of CapA provide a solid foundation for application in the food and biotechnology fields.


Assuntos
Aspergillus niger/enzimologia , Carboxipeptidases/metabolismo , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Especificidade por Substrato , Temperatura
12.
Microb Cell Fact ; 20(1): 151, 2021 Aug 03.
Artigo em Inglês | MEDLINE | ID: mdl-34344380

RESUMO

BACKGROUND: The aromatic compounds vanillin and vanillic acid are important fragrances used in the food, beverage, cosmetic and pharmaceutical industries. Currently, most aromatic compounds used in products are chemically synthesized, while only a small percentage is extracted from natural sources. The metabolism of vanillin and vanillic acid has been studied for decades in microorganisms and many studies have been conducted that showed that both can be produced from ferulic acid using bacteria. In contrast, the degradation of vanillin and vanillic acid by fungi is poorly studied and no genes involved in this metabolic pathway have been identified. In this study, we aimed to clarify this metabolic pathway in Aspergillus niger and identify the genes involved. RESULTS: Using whole-genome transcriptome data, four genes involved in vanillin and vanillic acid metabolism were identified. These include vanillin dehydrogenase (vdhA), vanillic acid hydroxylase (vhyA), and two genes encoding novel enzymes, which function as methoxyhydroquinone 1,2-dioxygenase (mhdA) and 4-oxo-monomethyl adipate esterase (omeA). Deletion of these genes in A. niger confirmed their role in aromatic metabolism and the enzymatic activities of these enzymes were verified. In addition, we demonstrated that mhdA and vhyA deletion mutants can be used as fungal cell factories for the accumulation of vanillic acid and methoxyhydroquinone from guaiacyl lignin units and related aromatic compounds. CONCLUSIONS: This study provides new insights into the fungal aromatic metabolic pathways involved in the degradation of guaiacyl units and related aromatic compounds. The identification of the involved genes unlocks new potential for engineering aromatic compound-producing fungal cell factories.


Assuntos
Aspergillus niger/genética , Aspergillus niger/metabolismo , Hidroquinonas/metabolismo , Lignina/metabolismo , Redes e Vias Metabólicas/genética , Ácido Vanílico/metabolismo , Aspergillus niger/enzimologia , Benzaldeídos/metabolismo , Hidroquinonas/química , Oxigenases de Função Mista , Ácido Vanílico/análise
13.
ACS Appl Mater Interfaces ; 13(29): 33830-33839, 2021 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-34264645

RESUMO

Enzymes immobilized on a nano-structured surface were used to switch the activity of one enzyme by a local pH change produced by another enzyme. Immobilized amyloglucosidase (AMG) and trypsin were studied as examples of the pH-dependent switchable "target enzymes." The reactions catalyzed by co-immobilized urease or esterase were increasing or decreasing the local pH, respectively, thus operating as "actuator enzymes." Both kinds of the enzymes, producing local pH changes and changing biocatalytic activity with the pH variation, were orthogonal in terms of the biocatalytic reactions; however, their operation was coupled with the local pH produced near the surface with the immobilized enzymes. The "target enzymes" (AMG and trypsin) were changed reversibly between the active and inactive states by applying input signals (urea or ester, substrates for the urease or esterase operating as the "actuator enzymes") and washing them out with a new portion of the background solution. The developed approach can potentially lead to switchable operation of several enzymes, while some of them are inhibited when the others are activated upon receiving external signals processed by the "actuator enzymes." More complex systems with branched biocatalytic cascades can be controlled by orthogonal biocatalytic reactions activating selected pathways and changing the final output.


Assuntos
Hidrolases de Éster Carboxílico/química , Enzimas Imobilizadas/química , Glucana 1,4-alfa-Glucosidase/química , Tripsina/química , Urease/química , Animais , Aspergillus niger/enzimologia , Biocatálise , Canavalia/enzimologia , Bovinos , Ensaios Enzimáticos , Concentração de Íons de Hidrogênio , Nanopartículas/química , Dióxido de Silício/química , Suínos
14.
Microb Cell Fact ; 20(1): 125, 2021 Jun 30.
Artigo em Inglês | MEDLINE | ID: mdl-34193117

RESUMO

BACKGROUND: Genome-scale metabolic model (GSMM) is a powerful tool for the study of cellular metabolic characteristics. With the development of multi-omics measurement techniques in recent years, new methods that integrating multi-omics data into the GSMM show promising effects on the predicted results. It does not only improve the accuracy of phenotype prediction but also enhances the reliability of the model for simulating complex biochemical phenomena, which can promote theoretical breakthroughs for specific gene target identification or better understanding the cell metabolism on the system level. RESULTS: Based on the basic GSMM model iHL1210 of Aspergillus niger, we integrated large-scale enzyme kinetics and proteomics data to establish a GSMM based on enzyme constraints, termed a GEM with Enzymatic Constraints using Kinetic and Omics data (GECKO). The results show that enzyme constraints effectively improve the model's phenotype prediction ability, and extended the model's potential to guide target gene identification through predicting metabolic phenotype changes of A. niger by simulating gene knockout. In addition, enzyme constraints significantly reduced the solution space of the model, i.e., flux variability over 40.10% metabolic reactions were significantly reduced. The new model showed also versatility in other aspects, like estimating large-scale [Formula: see text] values, predicting the differential expression of enzymes under different growth conditions. CONCLUSIONS: This study shows that incorporating enzymes' abundance information into GSMM is very effective for improving model performance with A. niger. Enzyme-constrained model can be used as a powerful tool for predicting the metabolic phenotype of A. niger by incorporating proteome data. In the foreseeable future, with the fast development of measurement techniques, and more precise and rich proteomics quantitative data being obtained for A. niger, the enzyme-constrained GSMM model will show greater application space on the system level.


Assuntos
Aspergillus niger/genética , Aspergillus niger/metabolismo , Enzimas/metabolismo , Aspergillus niger/enzimologia , Enzimas/genética , Técnicas de Inativação de Genes , Genoma Fúngico , Cinética , Engenharia Metabólica , Modelos Biológicos , Fenótipo , Proteoma/metabolismo
15.
Biochimie ; 189: 26-39, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34116131

RESUMO

Aspartic proteases are the targets for structure-based drug design for their role in physiological processes and pharmaceutical applications. Structural insights into the thermal inactivation mechanism of an aspartic protease in presence and absence of bound pepstatin A have been obtained by kinetics of thermal inactivation, CD, fluorescence spectroscopy and molecular dynamic simulations. The irreversible thermal inactivation of the aspartic protease comprised of loss of tertiary and secondary structures succeeded by the loss of activity, autolysis and aggregation The enthalpy and entropy of thermal inactivation of the enzyme in presence of pepstatin A increased from 81.2 to 148.5 kcal mol-1, and from 179 to 359 kcal mol-1 K-1 respectively. Pepstatin A shifted the mid-point of thermal inactivation of the protease from 58 °C to 77 °C. The association constant (K) for pepstatin A with aspartic protease was 2.5 ± 0.3 × 10 5 M-1 and ΔGo value was -8.3 kcal mol-1. Molecular dynamic simulation studies were able to delineate the role of pepstatin A in stabilizing backbone conformation and side chain interactions. In the Cα-backbone, the short helical segments and the conserved glycines were part of the most unstable segments of the protein. Understanding the mechanism of thermal inactivation has the potential to develop re-engineered thermostable proteases.


Assuntos
Ácido Aspártico Proteases , Aspergillus niger/enzimologia , Proteínas Fúngicas , Pepstatinas/química , Ácido Aspártico Proteases/antagonistas & inibidores , Ácido Aspártico Proteases/química , Proteínas Fúngicas/antagonistas & inibidores , Proteínas Fúngicas/química , Concentração de Íons de Hidrogênio , Ligação Proteica , Espectrometria de Fluorescência
16.
Anal Bioanal Chem ; 413(17): 4407-4416, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-34081166

RESUMO

A novel copper-based metal-organic framework (Cu-MOF) with a large specific surface area and high porosity was synthesized. The Cu-MOF was a good peroxidase-mimicking enzyme and showed a high affinity with hydrogen peroxide in a wide pH range. The catalytic mechanism of Cu-MOF has been studied further based on comparing the characteristic of the Cu-MOF with some isomorphic MOFs. The catalytic activity center of Cu-MOF was determined to be the cupric ion rather than the ligand, which effectively promoted the generation of free radicals and electron transfer in the reaction progress. The high affinity of Cu-MOF to hydrogen peroxide proved it as an ideal catalyst for the chemiluminescence (CL) reaction involving hydrogen peroxide. Therefore, the CL method with high sensitivity could be established for detecting various substrates. A double-enzyme CL glucose biosensing platform was constructed for the determination of serum glucose employing the peroxidase-mimicking properties of Cu-MOF as well as glucose oxidase (GOx).


Assuntos
Técnicas Biossensoriais/métodos , Glicemia/análise , Cobre/química , Estruturas Metalorgânicas/química , Aspergillus niger/enzimologia , Catálise , Glucose Oxidase/química , Humanos , Peróxido de Hidrogênio/química , Limite de Detecção , Medições Luminescentes/métodos , Modelos Moleculares , Peroxidase/química
17.
Bioresour Technol ; 337: 125365, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34102515

RESUMO

The feasibility of co-fermentation of food waste and spent mushroom substance for lactic acid with Aspergillus niger cellulase replacing commercial cellulase was explored. In this study, Enterococcus mundtii was used in this study because it could utilize hexose and pentose. When the ratio of food waste and spent mushroom substance was 1:2, lactic acid concentration was 39.22 g/L, 39.28% higher than the weighted average of experimental lactic acid concentrations, indicating that the co-fermentation had positive synergistic effects. Results showed 92.62% of sugars of pretreated spent mushroom substance was released by Aspergillus niger cellulase. Moreover, when Aspergillus niger cellulase was added into the lactic acid fermentation system at 24 h, lactic acid concentration reached 48.72 g/L, which was 22.97% higher than that of the control group with commercial cellulase, because of the disappearance of Veillonella and Saccharomycetales with the Aspergillus niger cellulase addition, thus making more substrates converted into lactic acid.


Assuntos
Agaricales , Celulase , Ácido Láctico/biossíntese , Agaricales/metabolismo , Aspergillus niger/enzimologia , Celulase/metabolismo , Enterococcus , Fermentação , Alimentos , Eliminação de Resíduos
18.
Biotechnol Bioeng ; 118(8): 3200-3214, 2021 08.
Artigo em Inglês | MEDLINE | ID: mdl-34050940

RESUMO

In plants, polygalacturonase-inhibiting proteins (PGIPs) play critical roles for resistance to fungal disease by inhibiting the pectin-depolymerizing activity of endopolygalacturonases (PGs), one type of enzyme secreted by pathogens that compromises plant cell walls and leaves the plant susceptible to disease. Here, the interactions between PGIPs from Phaseolus vulgaris (PvPGIP1 and PvPGIP2) and PGs from Aspergillus niger (AnPG2), Botrytis cinerea (BcPG1 and BcPG2), and Fusarium moniliforme (FmPG3) were reconstituted through a yeast two hybrid (Y2H) system to investigate the inhibition efficiency of various PvPGIP1 and 2 truncations and mutants. We found that tPvPGIP2_5-8, which contains LRR5 to LRR8 and is only one-third the size of the full length peptide, exhibits the same level of interactions with AnPG and BcPGs as the full length PvPGIP2 via Y2H. The inhibitory activities of tPvPGIP2_5-8 on the growth of A. niger and B. cinerea were then examined and confirmed on pectin agar. On pectin assays, application of both full length PvPGIP2 and tPvPGIP2_5-8 clearly slows down the growth of A. niger and B. cinerea. Investigation on the sequence-function relationships of PGIP utilizing a combination of site directed mutagenesis and a variety of peptide truncations suggests that LRR5 could have the most essential structural feature for the inhibitory activities, and may be a possible target for the future engineering of PGIP with enhanced activity. This study highlights the potential of plant-derived PGIPs as a candidate for future in planta evaluation as a pest control agent.


Assuntos
Aspergillus niger/enzimologia , Proteínas Fúngicas , Fusarium/enzimologia , Controle Biológico de Vetores , Phaseolus/química , Proteínas de Plantas/química , Poligalacturonase , Proteínas Fúngicas/antagonistas & inibidores , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Phaseolus/genética , Proteínas de Plantas/genética , Poligalacturonase/antagonistas & inibidores , Poligalacturonase/química , Poligalacturonase/genética
19.
Carbohydr Polym ; 266: 118105, 2021 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-34044923

RESUMO

Highly stable and reliable monitoring of glucose is of great importance for diabetes patients. This paper describes the application of two types of polymer for developing a reliable impedimetric glucose biosensor by designing an efficient nanoporous microenvironment for enzyme loading. Polyvinyl alcohol (PVA) was used as a sacrifice polymer to prepare a uniform 3D-nanoporous ZnO (3D-NPZnO) platform through electrodeposition of ZnO/PVA layer followed by PVA elimination via annealing. The carbohydrate polymer, chitosan (CTS), with a high isoelectric point (pI = 7.0-9.0), was selected in accompanying with 3D-NPZnO (pI = 9.5) to provide a hierarchical 3D-NPZnO/CTS microenvironment of a favorable isoelectric point for glucose oxidase enzyme (pI = 4.2) loading. The characterization of structural features and monitoring of the biosensor fabrication process was performed using FE-SEM, EDX, TGA-DTG, FTIR, UV-Vis, BET-BJH, XRD, CV, and EIS techniques. The fabricated platform, which shows a wide linear range of 1.0-18.0 mM and a low detection limit of 0.2 mM for glucose determination, was successfully used for real sample analysis. The proposed fabrication method can be applied for immobilizing the other low isoelectric point enzymes and biomolecules.


Assuntos
Glicemia/análise , Quitosana/química , Álcool de Polivinil/química , Óxido de Zinco/química , Aspergillus niger/enzimologia , Técnicas Biossensoriais , Glicemia/química , Técnicas Eletroquímicas , Enzimas Imobilizadas/química , Proteínas Fúngicas/química , Glucose Oxidase/química , Humanos , Limite de Detecção , Porosidade , Reprodutibilidade dos Testes
20.
J Oleo Sci ; 70(5): 637-645, 2021 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-33840663

RESUMO

The objective of this study was to obtain optimization results from the biological hydrolysis of Oil Palm Empty Fruit Bunches (OPEFB) using Aspergillus niger (A. niger) BIOTROP 2173 isolated from grain. Optimized hydrolysis parameters include temperature, pH and time. The hydrolysis process was carried out by growing A. niger on OPEFB powder (± 30 mesh) through two schemes, namely hydrolysis on OPEFB pretreatment with 10% NaOH and hydrolysis on OPEFB non-pretreatment. The optimization results show that the best hydrolysis process of A. niger BIOTROP 2173 occurs in OPEFB pretreatment. The optimum conditions for temperature, pH and time obtained are 40°C, 6 and 24 hours, respectively. Although the amount of reducing sugar produced was lower than the OPEFB non-pretreatment, the performance of the cellulase enzyme during the hydrolysis process of OPEFB pretreatment was very good, with a fast hydrolysis rate. These results indicate that the performance of A. niger BIOTROP 2173 in the hydrolysis process is influenced by the pretreatment stage. The optimum conditions obtained then became a reference in the production of reducing sugar based on A. niger BIOTROP 2173. The amount of reducing sugar produced from OPEFB pretreatment was 0.94 mg.mL-1, while for OPEFB non-pretreatment was 15.83 mg.mL-1.


Assuntos
Arecaceae/química , Aspergillus niger , Biomassa , Celulases , Aspergillus niger/enzimologia , Concentração de Íons de Hidrogênio , Hidrólise , Temperatura
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